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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_545267_574965_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
545267 - 574965
Intron Length:
29699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTCCTTTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.5
0.62
0.8
74.4
35.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
74.6
0.86
1.2
84.49
36.3

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002503
545148 - 620148
75001
ENSAPLT00000018715
545148 - 604178
59031