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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5459659_5498354_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5459659 - 5498354
Intron Length:
38696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QILAEEKHKELFEELVKKFK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
66
45.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
46.7
-0.3
3.2
75.5
39.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267