About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_55203_56143_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55203 - 56143
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCC
5'SS Class:
major
3'SS Sequence:
CTTATTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
ATTCTCTTATTT
Flanking Amino Acid:
EVVNKLAPYAVYDIVKNYTA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.4
34.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.3
0.73
0.8
80.7
31.2
Minor 5ss
47.6
-0.2
2.3
62.8
41.7
Minor BPS
63.7
0.51
1.5
79.4
36.8

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944