Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5548829_5553633_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5548829 - 5553633

Intron Length:

4805

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATATGGG

5'SS Class:

major

3'SS Sequence:

TTTAATCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGATTTTTAATC

Flanking Amino Acid:

TCAACITSDNRSLVANLAAA

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

62.1

42.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.5

0.69

0.8

78.2

35.8

Minor 5ss

37.5

-1.4

3.2

49.2

47.1

Minor BPS

0.61

1.1

71.24

Associated Gene:

Gene:

ADK

Ensembl Gene ID:

ENSAPLG00000010871

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011320

5442015 - 5703281

261267