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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5553743_5623816_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5553743 - 5623816
Intron Length:
70074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAACTATTAAAA
Flanking Amino Acid:
VEKAKVYYIAGFFLTVSPEA
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.7
0.51
1
65.3
41.1
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
48.3
-0.1
1.6
56.28
35.2

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267