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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5623988_5655188_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5623988 - 5655188
Intron Length:
31201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATAATTAACT
Flanking Amino Acid:
YVDVLFGNETEAATFAREQG
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.8
81.9
34.3
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
69
0.67
1.8
87.76
36.6

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267