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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5655225_5664203_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5655225 - 5664203
Intron Length:
8979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTAATA
Flanking Amino Acid:
ATFAREQGFETEDIKEIAKK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74
0.54
0.9
70.3
34
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
73.8
0.74
1.5
80.44
35.6

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267