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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5664319_5683909_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5664319 - 5683909
Intron Length:
19591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTATAG
Flanking Amino Acid:
QGKDDTVMATANEVTTFPVL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.2
0.59
0.9
69.8
35.4
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
48.1
-0.2
2.1
61.88
45.5

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267