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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5683997_5703156_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5683997 - 5703156
Intron Length:
19160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
GCTTTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCTTC
Flanking Amino Acid:
TNGAGDAFVGGFLSQLVYDR
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
72.9
0.52
0.9
65.1
41.2
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
44.9
-0.4
3.6
73.5
38.4

Associated Gene:

Gene:
ADK
Ensembl Gene ID:
ENSAPLG00000010871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011320
5442015 - 5703281
261267