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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_57612_63202_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57612 - 63202
Intron Length:
5591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTTCTCCATA
Flanking Amino Acid:
NVMAPGLTIQAVRVTKPKIP
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
84.5
0.78
0.6
81
24.4
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
56.5
0.2
2
74.85
37.3

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944