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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5792814_5792965_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5792814 - 5792965
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
CACTCCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCTTCCCCCACT
Flanking Amino Acid:
SACRIQGKNADNMLFCDSCD
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69
38.5
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
74.2
0.54
0.8
69.9
30.6
Minor 5ss
41.7
-0.9
2.8
54.8
43.4
Minor BPS
46.7
-0.1
2.3
68.6
47.9

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248