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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5793048_5794012_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5793048 - 5794012
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATG
5'SS Class:
major
3'SS Sequence:
TTCCTTTATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCCTTTATG
Flanking Amino Acid:
CDPPLSRMPKGMWICQVCRP
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.5
37.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80
0.68
0.8
77.2
30.4
Minor 5ss
31.7
-2.1
3
40
45.6
Minor BPS
74.4
0.62
1.6
79.54
36.8

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248