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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5798072_5799547_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5798072 - 5799547
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACAC
5'SS Class:
major
3'SS Sequence:
TTTTAAATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAACA
Flanking Amino Acid:
QSCTSLVLATDTEIKLSIKQ
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
57.1
42.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
1
67.9
41.1
Minor 5ss
36.7
-1.5
3.3
50.8
45.7
Minor BPS
57.4
0.23
2
79.22
36

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248