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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5799670_5801650_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5799670 - 5801650
Intron Length:
1981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTACCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACT
Flanking Amino Acid:
FKQARELSLEKIGCKNTGET
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.4
0.46
1.1
65.6
40.8
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
74.1
0.84
1.5
92.32
29.7

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248