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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5801767_5803711_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5801767 - 5803711
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
AATTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTCTAATT
Flanking Amino Acid:
YSSPYPQEYARLPKLYLCEF
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
78.1
35.4
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
64.8
0.54
1.6
82.33
32.9

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248