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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5803854_5806932_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5803854 - 5806932
Intron Length:
3079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GTAACTTCATCT
Flanking Amino Acid:
YRRNDLSVFEVDGNVSKIYC
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81.1
0.7
0.8
73.3
37.2
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
48.5
-0
1.8
66.94
43.3

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248