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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5807095_5809527_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5807095 - 5809527
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTCCTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
ACTGCTTTGACA
Flanking Amino Acid:
GCHLVGYFSKEKLCQQKYNV
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.5
0.64
0.7
76.5
25.6
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
64
0.43
1.4
67.9
39

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248