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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5809622_5830060_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5809622 - 5830060
Intron Length:
20439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTTTTCATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
QGFGRFLIDFSYLLSRREGQ
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.8
74.5
35
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248