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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5830293_5832209_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5830293 - 5832209
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGGATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAAAT
Flanking Amino Acid:
QHSMIDKREDRFVIIRREKL
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.6
32.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.1
0.45
1
63.3
42.6
Minor 5ss
27.4
-2.6
2.9
31.8
42.6
Minor BPS
58.8
0.35
1.8
74.89
42

Associated Gene:

Gene:
KAT6B
Ensembl Gene ID:
ENSAPLG00000010936
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011438
5737053 - 5839300
102248