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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5861036_5867120_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5861036 - 5867120
Intron Length:
6085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGCATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
CTCGCCTTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
70.3
0.46
1
59.1
46.1
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
68.7
0.45
1.6
66.7
47.1

Associated Gene:

Gene:
DUPD1
Ensembl Gene ID:
ENSAPLG00000012079
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012571
5846839 - 5867218
20380