About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5885345_5891378_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5885345 - 5891378
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCACTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TATAACTGAACC
Flanking Amino Acid:
YIRVALNSPRGKVLVHCAMG
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
69.1
0.48
1
70
32.1
Major PPT
74.9
0.56
0.8
65.3
35.9
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
59.3
0.27
1.7
71.13
39

Associated Gene:

Gene:
DUSP13
Ensembl Gene ID:
ENSAPLG00000012125
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012618
5885088 - 5892521
7434