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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5908529_5910932_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5908529 - 5910932
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATG
Flanking Amino Acid:
FIGKALNTSGEGTQILFIFP
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.7
0.44
1.1
67.7
42.2
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
66.7
0.38
1.8
74.65
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030998
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036822
5908335 - 5934337
26003