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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5911154_5912280_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5911154 - 5912280
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
CATCTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
CATCTTTCAACA
Flanking Amino Acid:
QVWPNIYLGDAWAARCKTTL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
65.3
40.7
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
74.1
0.54
0.9
69.6
35.1
Minor 5ss
34.7
-1.7
2.9
37.5
39.7
Minor BPS
53.3
0.1
1.5
61.69
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030998
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036822
5908335 - 5934337
26003