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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_592788_597878_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
592788 - 597878
Intron Length:
5091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
TTTTCTTTTTCC
Flanking Amino Acid:
WFVQWLLLKYKSIISRRFFC
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
46.8
-0.2
3.6
78.32
37.8

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032790
531787 - 603178
71392
ENSAPLT00000046253
529631 - 603178
73548
ENSAPLT00000021463
545148 - 604178
59031
ENSAPLT00000042779
591504 - 605605
14102
ENSAPLT00000040702
545148 - 603178
58031
ENSAPLT00000018715
545148 - 604178
59031
ENSAPLT00000037394
585880 - 605605
19726
ENSAPLT00000002503
545148 - 620148
75001