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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5944699_5946782_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5944699 - 5946782
Intron Length:
2084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CAATATCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
CTTTCTCCAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.3
79.8
35.3
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
65
0.34
1
58.7
41.1
Minor 5ss
40.8
-1
2.8
52
39.1
Minor BPS
52
0.06
1.9
67.95
39

Associated Gene:

Gene:
SAMD8
Ensembl Gene ID:
ENSAPLG00000012180
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012687
5944072 - 5952501
8430