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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5947392_5949227_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5947392 - 5949227
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
YPPLPDIFLDSVPRIPWAFA
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
SAMD8
Ensembl Gene ID:
ENSAPLG00000012180
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012687
5944072 - 5952501
8430