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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5949324_5950038_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5949324 - 5950038
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TATTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GTATTCTTACTG
Flanking Amino Acid:
WLLVLLLHKHRSILLRRLCS
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
87.4
0.84
0.7
80.8
36.5
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
56.8
0.08
1.7
60.31
41.9

Associated Gene:

Gene:
SAMD8
Ensembl Gene ID:
ENSAPLG00000012180
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012687
5944072 - 5952501
8430