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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5950157_5950982_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5950157 - 5950982
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACTTACTAAAGG
Flanking Amino Acid:
PGQHLQCTGKLYGNVWAKLQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
76.4
0.59
0.8
73.8
36.6
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
46.6
-0.3
2.2
54.27
46.6

Associated Gene:

Gene:
SAMD8
Ensembl Gene ID:
ENSAPLG00000012180
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012687
5944072 - 5952501
8430