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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5976779_5980077_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5976779 - 5980077
Intron Length:
3299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CATTACCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CACTCATTACCT
Flanking Amino Acid:
ATPVACQPPRTPMAIPPSYA
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.3
0.64
0.9
74
36
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
53
0.17
2
70.02
46.5

Associated Gene:

Gene:
VDAC2
Ensembl Gene ID:
ENSAPLG00000012472
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013014
5976639 - 5986898
10260