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Intron Name: Anas_platyrhynchos_platyrhynchos_6_597997_601832_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

597997 - 601832

Intron Length:

3836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACTTC

5'SS Class:

strong_major

3'SS Sequence:

ACTCTTTCACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TTGTGTTTCACT

Flanking Amino Acid:

PGMHFKCSPKLFGDWESHLR

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.6

35.3

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

73.6

0.53

0.9

66.8

38.7

Minor 5ss

47.8

-0.2

2.9

67.4

Minor BPS

55.2

0.24

2.2

79.01

43.8

Associated Gene:

Gene:

SGMS1

Ensembl Gene ID:

ENSAPLG00000002477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032790

531787 - 603178

71392

ENSAPLT00000046253

529631 - 603178

73548

ENSAPLT00000021463

545148 - 604178

59031

ENSAPLT00000042779

591504 - 605605

14102

ENSAPLT00000018715

545148 - 604178

59031

ENSAPLT00000040702

545148 - 603178

58031

ENSAPLT00000002503

545148 - 620148

75001

ENSAPLT00000037394

585880 - 605605

19726