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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5980150_5981189_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5980150 - 5981189
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACTTTTTAACT
Flanking Amino Acid:
SARDIFNKGYGFGLVKLDVK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.9
0.47
1.1
75.7
37.6
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
72.5
0.78
1.1
78.76
37.6

Associated Gene:

Gene:
VDAC2
Ensembl Gene ID:
ENSAPLG00000012472
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013014
5976639 - 5986898
10260