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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5982512_5982590_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5982512 - 5982590
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTCCAATT
Flanking Amino Acid:
LGTEIAIEDQIAKGLKLTFD
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.7
0.4
0.9
67.9
32.5
Minor 5ss
32.2
-2
3.5
47.2
48.2
Minor BPS
54.7
0.23
1.9
76.58
40.6

Associated Gene:

Gene:
VDAC2
Ensembl Gene ID:
ENSAPLG00000012472
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013014
5976639 - 5986898
10260