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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5983309_5984481_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5983309 - 5984481
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TATATTTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATATTT
Flanking Amino Acid:
KTGDFQLHTNVNDGSEFGGS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.4
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
1
73.3
41.5
Minor 5ss
40.4
-1.1
2.8
53.8
42.8
Minor BPS
55.7
0.26
1.8
79.9
36.7

Associated Gene:

Gene:
VDAC2
Ensembl Gene ID:
ENSAPLG00000012472
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013014
5976639 - 5986898
10260