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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5984633_5985453_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5984633 - 5985453
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATGTTTCAATT
Flanking Amino Acid:
YKLDSTASISAKVNNSSLVG
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.7
0.78
0.7
78.2
36
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
55.8
0.26
1.6
72.41
39.3

Associated Gene:

Gene:
VDAC2
Ensembl Gene ID:
ENSAPLG00000012472
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013014
5976639 - 5986898
10260