Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6005060_6005916_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6005060 - 6005916

Intron Length:

857

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

ACAATTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTATTCATGACT

Flanking Amino Acid:

LIKAKKVIEIGVLTGYNTLN

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

27.6

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

63.4

0.3

0.9

54.9

40.5

Minor 5ss

38.2

-1.3

48.6

47.1

Minor BPS

66.8

0.61

1.6

84.71

35.3

Associated Gene:

Gene:

COMTD1

Ensembl Gene ID:

ENSAPLG00000012709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013230

6001865 - 6008440

6576