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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6006023_6007479_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6006023 - 6007479
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
TTCCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTGTTTCATT
Flanking Amino Acid:
EHPILKKLRLITAEHPWGRM
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
77.1
37.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.5
0.82
0.7
84.7
23.1
Minor 5ss
33.9
-1.8
2.7
41.7
38.3
Minor BPS
52.1
0.15
2.1
76.34
41.1

Associated Gene:

Gene:
COMTD1
Ensembl Gene ID:
ENSAPLG00000012709
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013230
6001865 - 6008440
6576