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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6007614_6008358_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6007614 - 6008358
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTCCCTTATTT
Flanking Amino Acid:
GVAFATGLLAGKKYPSLVFG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
68.1
0.65
1.6
82.47
38.8

Associated Gene:

Gene:
COMTD1
Ensembl Gene ID:
ENSAPLG00000012709
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013230
6001865 - 6008440
6576