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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_601987_602714_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
601987 - 602714
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTTCTTTACA
Flanking Amino Acid:
LTLTYLFIKEYSPRRLWWYH
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.7
40.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.4
0.8
0.8
79.6
32.5
Minor 5ss
45.8
-0.4
2.8
59.1
45.3
Minor BPS
64.3
0.44
1.6
71.54
40.3

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018715
545148 - 604178
59031
ENSAPLT00000040702
545148 - 603178
58031
ENSAPLT00000002503
545148 - 620148
75001
ENSAPLT00000037394
585880 - 605605
19726
ENSAPLT00000032790
531787 - 603178
71392
ENSAPLT00000046253
529631 - 603178
73548
ENSAPLT00000021463
545148 - 604178
59031
ENSAPLT00000042779
591504 - 605605
14102