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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_605250_620099_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
605250 - 620099
Intron Length:
14850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACAAGCC
5'SS Class:
major
3'SS Sequence:
CAAGGGACCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTTCTCTAACC
Flanking Amino Acid:
SQTNLLARVWWYKQNWMYRS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.1
53.1
36.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
50.6
0.02
1
43.8
41.8
Minor 5ss
30.1
-2.3
3.6
39.4
41.3
Minor BPS
70
0.61
1.6
80.02
34.5

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002503
545148 - 620148
75001