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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6138823_6147557_F

Intron Information:

Intron Rank:
141623
Intron Class:
major
Intron Phase:
Intron Coordinates:
6138823 - 6147557
Intron Length:
8735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GCTTCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
72.9
36.2
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
79.9
0.94
1.1
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026275
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034327
6137744 - 6148097
10354