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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_621584_623504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
621584 - 623504
Intron Length:
1921

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTATTA
Flanking Amino Acid:
FLTQENSSSNDYDDPLPTQK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
72.9
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.4
0.66
0.8
74.1
34.7
Minor 5ss
29.3
-2.4
3.8
36.8
41.9
Minor BPS
67.3
0.54
1.5
75.6
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560