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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_623615_623910_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
623615 - 623910
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGGGCCTGACAG
Flanking Amino Acid:
CTGPVAEIPLMGYANPDQVG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.2
39
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
45.6
-0.5
2.5
56.4
42.4
Minor BPS
43.3
-0.6
1.9
46.17
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560