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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_624061_624609_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
624061 - 624609
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTAGGACCA
Flanking Amino Acid:
GMVSQRLRLEVLKKLKSKYG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82.1
0.72
0.7
81.3
23.8
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
42.5
-0.5
2.4
64.76
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560