About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_626043_627317_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
626043 - 627317
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATT
5'SS Class:
major
3'SS Sequence:
ATCTTCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCCTACACA
Flanking Amino Acid:
DENGHDLGLISWFAVHPVSM
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.5
40.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.1
0.63
0.8
70.5
35.6
Minor 5ss
37.2
-1.4
3.5
57.6
46.7
Minor BPS
61.2
0.35
2.1
77.53
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560