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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6273931_6275432_F

Intron Information:

Intron Rank:
134609
Intron Class:
major
Intron Phase:
Intron Coordinates:
6273931 - 6275432
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
77.3
37.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
80.5
30.3
Minor 5ss
35.6
-1.6
3.8
56.2
48
Minor BPS
67.8
0.55
2
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045840
6273810 - 6317691
43882