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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_629481_631150_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
629481 - 631150
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGGCTGCTGATT
Flanking Amino Acid:
IGQNIYSKAKELYANASQEI
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
65.9
0.36
0.9
62.8
39.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
40.8
-0.6
2.2
57.15
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560