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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_6296616_6317190_F

Intron Information:

Intron Rank:
134611
Intron Class:
major
Intron Phase:
Intron Coordinates:
6296616 - 6317190
Intron Length:
20575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATCTTTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.7
0.69
0.8
71.9
38
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
50.2
0.09
2
71.91
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045840
6273810 - 6317691
43882