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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_631256_631378_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
631256 - 631378
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGTG
5'SS Class:
major
3'SS Sequence:
CTTTTTGGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCTCTCATTT
Flanking Amino Acid:
VQVELNATHTVKTCKPALGY
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.9
40.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.7
0.44
1.2
74.9
39
Minor 5ss
36.2
-1.6
3.5
53
44.8
Minor BPS
49.4
0.03
1.8
68.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560