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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_633760_634451_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
633760 - 634451
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTAATGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTCCCTTAATG
Flanking Amino Acid:
LAIVAVPGEFTTMSGRRLRE
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.3
83.5
35.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
66.9
0.38
0.9
58.7
42.7
Minor 5ss
49.1
-0.1
2.5
67.8
36.2
Minor BPS
77
0.71
1.2
75.58
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002706
619985 - 637544
17560