Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_64994_65269_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64994 - 65269

Intron Length:

276

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGTA

5'SS Class:

major

3'SS Sequence:

GTTGCTGTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TTCCTGTCCATC

Flanking Amino Acid:

ETEKRISEIEDAAFLAREKA

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.2

72.4

39.5

Major BPS

81.9

0.79

0.9

80.1

Major PPT

0.29

1.1

44.4

Minor 5ss

45.5

-0.5

3.3

64.4

Minor BPS

38.6

-0.9

2.3

50.84

40.8

Associated Gene:

Gene:

ERLIN1

Ensembl Gene ID:

ENSAPLG00000012553

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013083

46851 - 65794

18944